Structures¶
Structure methods management¶
A Structure method is the statistical method used to established a group structure population.
These type of methods can be managed in the menu Admin > Structure > Method.
It is defined by the fields described in the table below. Fields in bold are required while italic ones are optional when submitting the form. Methods can be edited from the table below the form.
Field name |
Description |
---|---|
Name |
The name of this structure method |
Description |
Description of the method |
Method file |
A file describing or giving information on how the method have been computed |
Manage structure datasets¶
A Structure dataset is a matrix describing genetic groups for a set of seedlots.
Structure can be managed in the menu Admin > Structure > Structure.
It is defined by the fields described in the table below. Fields in bold are required while italic ones are optional when submitting the form. Structure can be edited from the table below the form.
Field name |
Description |
---|---|
Name |
The name of this structure method (for instance : Amaizing ) |
Date |
Date of creation of this structure dataset |
Reference |
??? |
Method |
The method used to compute this structure dataset |
Person |
The person who build this structure dataset |
Description |
A description of the structure dataset |
Projects |
Projects in which the structure dataset is available |
Manage population groups¶
A population group is a genetic groups explaining genetic structure of accessions.
Groups can be managed in the menu Admin > Structure > Group.
It is defined by the fields described in the table below. Fields in bold are required while italic ones are optional when submitting the form. Groups can be edited from the table below the form.
Field name |
Description |
---|---|
Name |
The name of this population group |
Description |
Description of the group |
Classification |
Structure dataset in which this group is used |
Insert structure data¶
Structure data can uploaded in Thaliadb with files. The form to submit data files can be found in the menu Admin > Structure > add data.
The file to submit must be a text CSV format with seedlot in line and population groups in column.