Thaliadb

Structures

Structure methods management

A Structure method is the statistical method used to established a group structure population.

These type of methods can be managed in the menu Admin > Structure > Method.

It is defined by the fields described in the table below. Fields in bold are required while italic ones are optional when submitting the form. Methods can be edited from the table below the form.

Field name

Description

Name

The name of this structure method

Description

Description of the method

Method file

A file describing or giving information on how the method have been computed

Manage structure datasets

A Structure dataset is a matrix describing genetic groups for a set of seedlots.

Structure can be managed in the menu Admin > Structure > Structure.

It is defined by the fields described in the table below. Fields in bold are required while italic ones are optional when submitting the form. Structure can be edited from the table below the form.

Field name

Description

Name

The name of this structure method (for instance : Amaizing )

Date

Date of creation of this structure dataset

Reference

???

Method

The method used to compute this structure dataset

Person

The person who build this structure dataset

Description

A description of the structure dataset

Projects

Projects in which the structure dataset is available

Manage population groups

A population group is a genetic groups explaining genetic structure of accessions.

Groups can be managed in the menu Admin > Structure > Group.

It is defined by the fields described in the table below. Fields in bold are required while italic ones are optional when submitting the form. Groups can be edited from the table below the form.

Field name

Description

Name

The name of this population group

Description

Description of the group

Classification

Structure dataset in which this group is used

Insert structure data

Structure data can uploaded in Thaliadb with files. The form to submit data files can be found in the menu Admin > Structure > add data.

The file to submit must be a text CSV format with seedlot in line and population groups in column.

../_images/Upload-structure-data.png

Form to upload structure data